Transferring Data to Galaxy for Processing

Launching Galaxy / Alveo

The version of the Galaxy processing engine which is tailored for use with Alveo can be launched directly from Alveo. It will use Alveo data.

To launch Galaxy / Alveo...
  • Click on Item Lists in the Alveo Navigation Bar.
  • Click the name of the Item List that you want to access in Galaxy.
  • Click on and from the dropdown menu select Use in Galaxy. Galaxy will launch in a new tab of your browser.

LaunchingGalaxy

Warning - When Galaxy / Alveo shows a login screen and you use it to log in, the data request from Alveo becomes lost. After you have logged in, you will need to close the Galaxy tab and export to Galaxy again. However, you shouldn't generally need to log out of Galaxy / Alveo, as its login info cookie has a very long expiry time, so this should be a rare occurrence.

All of the Documents in all of the Items in the Item List you selected will now be accessible in Galaxy / Alveo. You will be shown a Galaxy screen similar to the following.

GalaxyImport

Galaxy Operation Basics

Mostly, Galaxy operation is out of scope for this Help. However, there are a few simple tips included here to get you started.
To see Galaxy's own Help pages...    Accessing the Galaxy Help
To see some basic operation instructions for the main Galaxy screen...    Getting Started with Galaxy
To see a quick guide to creating a Galaxy workflow...    Galaxy Workflows
To see instructions on the Galaxy / Alveo data importer (which is the screen shown above)...    Galaxy / Alveo Data Importer
To see instructions for the Galaxy / Alveo ParseEval tool...    The ParseEval Tool
To see instructions for loading data files into Galaxy / Alveo directly from your computer...    Uploading Data Files from Your Computer